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Creators/Authors contains: "Kazmierczak, Nathanael P."

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  1. Abstract

    Computation of binding constants from spectrophotometric titration data is a very popular application of chemometric hard modeling. However, the calculated values are misleading if the correct binding model is not used. Given that many supramolecular systems of interest feature unknown speciation, a priori determination of binding stoichiometry constitutes an important unsolved problem in chemometrics. We present a new and reliable algorithm for accomplishing this task, implemented using a hybrid particle swarm optimization technique. Simultaneous optimization of stoichiometry ratios and binding constants allows the optimal binding model to be calculated in just a few minutes for systems with up to four reactions. Simulated data studies demonstrate that the algorithm finds the correct stoichiometry with up to nine reactions in the absence of noise, including accurately determining species with unusual stoichiometry, such as H2G5. Application to four experimental datasets shows the algorithm is robust to experimental errors for a variety of chemical systems and binding models. This algorithm will facilitate the discovery of complex binding models, increase efficiency in titration analysis, and avert incorrect stoichiometry models, thereby improving the reliability of binding constant information in spectrophotometric titrations.

     
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  2. Abstract

    In the past decade, transition metal complexes have gained momentum as electron spin‐based quantum bit (qubit) candidates due to their synthetic tunability and long achievable coherence times. The decoherence of magnetic quantum states imposes a limit on the use of these qubits for quantum information technologies, such as quantum computing, sensing, and communication. With rapid recent development in the field of molecular quantum information science, a variety of chemical design principles for prolonging coherence in molecular transition metal qubits have been proposed. Here the spin‐spin, motional, and spin‐phonon regimes of decoherence are delineated, outlining design principles for each. It is shown how dynamic ligand field models can provide insights into the intramolecular vibrational contributions in the spin‐phonon decoherence regime. This minireview aims to inform the development of molecular quantum technologies tailored for different environments and conditions.

     
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  3. Abstract

    To implement equilibrium hard‐modeling of spectroscopic titration data, the analyst must make a variety of crucial data processing choices that address negative absorbance and molar absorptivity values. The efficacy of three such methodological options is evaluated via high‐throughput Monte Carlo simulations, root‐mean‐square error surface mapping, and two mathematical theorems. Accuracy of the calculated binding constant values constitutes the key figure of merit used to compare different data analysis approaches. First, using singular value decomposition to filter the raw absorbance data prior to modeling often reduces the number of negative values involved but has little effect on the calculated binding constant despite its ability to address spectrometer noise. Second, both truncation of negative molar absorptivity values and the fast nonnegative least squares algorithms are superior to unconstrained regression because they avoid local minima; however, they introduce bias into the calculated binding constants in the presence of negative baseline offsets. Finally, we establish two theorems showing that negative values are best addressed when all the chemical solutions leading to the raw absorbance data are the result of mixing exactly two distinct stock solutions. This allows the raw absorbance data to be shifted up, eliminating negative baseline offsets, without affecting the concentration matrix, residual matrix, or calculated binding constants. Otherwise, the data cannot be safely upshifted. A comprehensive protocol for analyzing experimental absorbance datasets with is included.

     
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